Source code for qutip.ipynbtools

"""
This module contains utility functions for using QuTiP with IPython notebooks.
"""
from qutip.ui.progressbar import BaseProgressBar
from qutip.utilities import _blas_info, available_cpu_count
import IPython

#IPython parallel routines moved to ipyparallel in V4
#IPython parallel routines not in Anaconda by default
if IPython.version_info[0] >= 4:
    try:
        from ipyparallel import Client
        __all__ = ['version_table', 'parfor', 'plot_animation',
                    'parallel_map', 'HTMLProgressBar']
    except:
         __all__ = ['version_table', 'plot_animation', 'HTMLProgressBar']
else:
    try:
        from IPython.parallel import Client
        __all__ = ['version_table', 'parfor', 'plot_animation',
                    'parallel_map', 'HTMLProgressBar']
    except:
         __all__ = ['version_table', 'plot_animation', 'HTMLProgressBar']


from IPython.display import HTML, Javascript, display

import matplotlib.pyplot as plt
from matplotlib import animation
from base64 import b64encode

import datetime
import uuid
import sys
import os
import time
import inspect

import qutip
import numpy
import scipy
import Cython
import matplotlib
import IPython


[docs]def version_table(verbose=False): """ Print an HTML-formatted table with version numbers for QuTiP and its dependencies. Use it in a IPython notebook to show which versions of different packages that were used to run the notebook. This should make it possible to reproduce the environment and the calculation later on. Returns -------- version_table: string Return an HTML-formatted string containing version information for QuTiP dependencies. """ html = "<table>" html += "<tr><th>Software</th><th>Version</th></tr>" packages = [("QuTiP", qutip.__version__), ("Numpy", numpy.__version__), ("SciPy", scipy.__version__), ("matplotlib", matplotlib.__version__), ("Cython", Cython.__version__), ("Number of CPUs", available_cpu_count()), ("BLAS Info", _blas_info()), ("IPython", IPython.__version__), ("Python", sys.version), ("OS", "%s [%s]" % (os.name, sys.platform)) ] for name, version in packages: html += "<tr><td>%s</td><td>%s</td></tr>" % (name, version) if verbose: html += "<tr><th colspan='2'>Additional information</th></tr>" qutip_install_path = os.path.dirname(inspect.getsourcefile(qutip)) html += ("<tr><td>Installation path</td><td>%s</td></tr>" % qutip_install_path) try: import getpass html += ("<tr><td>User</td><td>%s</td></tr>" % getpass.getuser()) except: pass html += "<tr><td colspan='2'>%s</td></tr>" % time.strftime( '%a %b %d %H:%M:%S %Y %Z') html += "</table>" return HTML(html)
class HTMLProgressBar(BaseProgressBar): """ A simple HTML progress bar for using in IPython notebooks. Based on IPython ProgressBar demo notebook: https://github.com/ipython/ipython/tree/master/examples/notebooks Example usage: n_vec = linspace(0, 10, 100) pbar = HTMLProgressBar(len(n_vec)) for n in n_vec: pbar.update(n) compute_with_n(n) """ def __init__(self, iterations=0, chunk_size=1.0): self.divid = str(uuid.uuid4()) self.textid = str(uuid.uuid4()) self.pb = HTML("""\ <div style="border: 2px solid grey; width: 600px"> <div id="%s" \ style="background-color: rgba(121,195,106,0.75); width:0%%">&nbsp;</div> </div> <p id="%s"></p> """ % (self.divid, self.textid)) display(self.pb) super(HTMLProgressBar, self).start(iterations, chunk_size) def start(self, iterations=0, chunk_size=1.0): super(HTMLProgressBar, self).start(iterations, chunk_size) def update(self, n): p = (n / self.N) * 100.0 if p >= self.p_chunk: lbl = ("Elapsed time: %s. " % self.time_elapsed() + "Est. remaining time: %s." % self.time_remaining_est(p)) js_code = ("$('div#%s').width('%i%%');" % (self.divid, p) + "$('p#%s').text('%s');" % (self.textid, lbl)) display(Javascript(js_code)) # display(Javascript("$('div#%s').width('%i%%')" % (self.divid, # p))) self.p_chunk += self.p_chunk_size def finished(self): self.t_done = time.time() lbl = "Elapsed time: %s" % self.time_elapsed() js_code = ("$('div#%s').width('%i%%');" % (self.divid, 100.0) + "$('p#%s').text('%s');" % (self.textid, lbl)) display(Javascript(js_code)) def _visualize_parfor_data(metadata): """ Visualizing the task scheduling meta data collected from AsyncResults. """ res = numpy.array(metadata) fig, ax = plt.subplots(figsize=(10, res.shape[1])) yticks = [] yticklabels = [] tmin = min(res[:, 1]) for n, pid in enumerate(numpy.unique(res[:, 0])): yticks.append(n) yticklabels.append("%d" % pid) for m in numpy.where(res[:, 0] == pid)[0]: ax.add_patch(plt.Rectangle((res[m, 1] - tmin, n - 0.25), res[m, 2] - res[m, 1], 0.5, color="green", alpha=0.5)) ax.set_ylim(-.5, n + .5) ax.set_xlim(0, max(res[:, 2]) - tmin + 0.) ax.set_yticks(yticks) ax.set_yticklabels(yticklabels) ax.set_ylabel("Engine") ax.set_xlabel("seconds") ax.set_title("Task schedule")
[docs]def parfor(task, task_vec, args=None, client=None, view=None, show_scheduling=False, show_progressbar=False): """ Call the function ``tast`` for each value in ``task_vec`` using a cluster of IPython engines. The function ``task`` should have the signature ``task(value, args)`` or ``task(value)`` if ``args=None``. The ``client`` and ``view`` are the IPython.parallel client and load-balanced view that will be used in the parfor execution. If these are ``None``, new instances will be created. Parameters ---------- task: a Python function The function that is to be called for each value in ``task_vec``. task_vec: array / list The list or array of values for which the ``task`` function is to be evaluated. args: list / dictionary The optional additional argument to the ``task`` function. For example a dictionary with parameter values. client: IPython.parallel.Client The IPython.parallel Client instance that will be used in the parfor execution. view: a IPython.parallel.Client view The view that is to be used in scheduling the tasks on the IPython cluster. Preferably a load-balanced view, which is obtained from the IPython.parallel.Client instance client by calling, view = client.load_balanced_view(). show_scheduling: bool {False, True}, default False Display a graph showing how the tasks (the evaluation of ``task`` for for the value in ``task_vec1``) was scheduled on the IPython engine cluster. show_progressbar: bool {False, True}, default False Display a HTML-based progress bar duing the execution of the parfor loop. Returns -------- result : list The result list contains the value of ``task(value, args)`` for each value in ``task_vec``, that is, it should be equivalent to ``[task(v, args) for v in task_vec]``. """ if show_progressbar: progress_bar = HTMLProgressBar() else: progress_bar = None return parallel_map(task, task_vec, task_args=args, client=client, view=view, progress_bar=progress_bar, show_scheduling=show_scheduling)
[docs]def parallel_map(task, values, task_args=None, task_kwargs=None, client=None, view=None, progress_bar=None, show_scheduling=False, **kwargs): """ Call the function ``task`` for each value in ``values`` using a cluster of IPython engines. The function ``task`` should have the signature ``task(value, *args, **kwargs)``. The ``client`` and ``view`` are the IPython.parallel client and load-balanced view that will be used in the parfor execution. If these are ``None``, new instances will be created. Parameters ---------- task: a Python function The function that is to be called for each value in ``task_vec``. values: array / list The list or array of values for which the ``task`` function is to be evaluated. task_args: list / dictionary The optional additional argument to the ``task`` function. task_kwargs: list / dictionary The optional additional keyword argument to the ``task`` function. client: IPython.parallel.Client The IPython.parallel Client instance that will be used in the parfor execution. view: a IPython.parallel.Client view The view that is to be used in scheduling the tasks on the IPython cluster. Preferably a load-balanced view, which is obtained from the IPython.parallel.Client instance client by calling, view = client.load_balanced_view(). show_scheduling: bool {False, True}, default False Display a graph showing how the tasks (the evaluation of ``task`` for for the value in ``task_vec1``) was scheduled on the IPython engine cluster. show_progressbar: bool {False, True}, default False Display a HTML-based progress bar during the execution of the parfor loop. Returns -------- result : list The result list contains the value of ``task(value, task_args, task_kwargs)`` for each value in ``values``. """ submitted = datetime.datetime.now() if task_args is None: task_args = tuple() if task_kwargs is None: task_kwargs = {} if client is None: client = Client() # make sure qutip is available at engines dview = client[:] dview.block = True dview.execute("from qutip import *") if view is None: view = client.load_balanced_view() ar_list = [view.apply_async(task, value, *task_args, **task_kwargs) for value in values] if progress_bar is None: view.wait(ar_list) else: if progress_bar is True: progress_bar = HTMLProgressBar() n = len(ar_list) progress_bar.start(n) while True: n_finished = sum([ar.progress for ar in ar_list]) progress_bar.update(n_finished) if view.wait(ar_list, timeout=0.5): progress_bar.update(n) break progress_bar.finished() if show_scheduling: metadata = [[ar.engine_id, (ar.started - submitted).total_seconds(), (ar.completed - submitted).total_seconds()] for ar in ar_list] _visualize_parfor_data(metadata) return [ar.get() for ar in ar_list]
def plot_animation(plot_setup_func, plot_func, result, name="movie", writer="avconv", codec="libx264", verbose=False): """ Create an animated plot of a Result object, as returned by one of the qutip evolution solvers. .. note :: experimental """ fig, axes = plot_setup_func(result) def update(n): return plot_func(result, n, fig=fig, axes=axes) anim = animation.FuncAnimation( fig, update, frames=len(result.times), blit=True) anim.save(name + '.mp4', fps=10, writer=writer, codec=codec) plt.close(fig) if verbose: print("Created %s.m4v" % name) video = open(name + '.mp4', "rb").read() video_encoded = b64encode(video).decode("ascii") video_tag = '<video controls src="data:video/x-m4v;base64,{0}">'.format( video_encoded) return HTML(video_tag)